Using Process Diagrams for The Graphical Representation of Biological Networks  

Oleh:

Kitano, Hiroaki ; Funahashi, Akira ; Matsuoka, Yukiko ; Oda, Kanae

Jenis: Article from Journal - ilmiah internasional
Dalam koleksi: Nature Biotechnology: The Science and Business of Biotechnology vol. 23 no. 8 (Agu. 2005), page 961-966.
Topik: network; process diagram; graphical representation; biological networks

Ketersediaan

Perpustakaan Pusat (Semanggi) Nomor Panggil: NN9.4 Non-tandon: 1 (dapat dipinjam: 0) Tandon: tidak ada

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Isi artikel

With the increased interest in understanding biological networks, such as protein-protein interaction networks and gene regulatory networks, methods for representing and communicating such networks in both human and machine readable form have become increasingly important. Although there has been significant progress in maching readable representation of networks, as exemplified by the systems biology mark up language (SBML), (http://www.sbml.org) issues in human readable representation have been largely ignored. This article diagram is a fully state transition based diagram that can be translated into machine readable forms such as SBML in a straightforward way. It is supported by cell designer, a pragrammatic network editing software (http://www.celldesigner.org) and has been used to represent a variety of networks of various sizes (from only a few components to several hundred components).

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